GenometriCorr USCS examples

We used two BED files in examples, both are generated by USCS genome bioinformatics browser.

The coords of USCS CpG islands were retrieved by>a_fs.check.hg19.cpgIslandExt.cpgNum=0&hgta_fs.check.hg19.cpgIslandExt.gcNum=0&hgta_fs.check.hg19.cpgIslandExt.length=0&

The coords of RefSeq genes were retrieved by

Creation of such URLs is described here GenomeWiki and here DigitHead's lab notebook.

The chromosome length data was extracted from the UCSC hg19 chromosome information table.